10724 Ank_2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10724	chr_17	Ank_2	528248	530002	+	Ank_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442150	Thaps10724.3, Thaps10724.1, Thaps10724.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0372

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0038	0.59	0.00078 5.2

Most Highly Correlated Transcripts

13308 PLN02948 0.8083	35164 acolac_lg 0.8004	19158 GRX_PICOT_like 0.7993	9247 hypothetical protein 0.7871	40200 TRX_reduct 0.7822	268443 SAICAR_synt_Sc 0.7789
267979 HCO3_cotransp superfamily 0.7768	38139 Chloroa_b-bind 0.772	35136 NA 0.7682	261823 FIG superfamily 0.7675

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ANK superfamily		ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of...	-	77.809	2.99E-17	336 - 427	superfamily	238125
ANK superfamily		ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of...	-	77.809	2.99E-17	336 - 427	superfamily	238125
Ank_2		Ankyrin repeats (3 copies); Ankyrin repeats (3 copies).	-	76.9111	2.60E-17	336 - 427	multi-dom	257303

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
36045		Not available	273521	206364	452424	Cre02.g141450.t1.2	AT5G42990.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments