260934 PLPDE_IV superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260934 chr_1 PLPDE_IV superfamily 1412510 1413938 - PLPDE_IV superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451538 Thaps260934.3, Thaps260934.2, Thaps260934.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0421

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0249
 0.31

Most Highly Correlated Transcripts

269095

AdoMet_MTases
0.9539

bd1941

(bd1941) NA
0.9496

bd410

(bd410) HNHc
0.9213

bd1841

(bd1841) CAP10 superfamily
0.9188

20816

PLPDE_IV superfamily
0.9149

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9103

13485

ncs2
0.9068

31818

Mito_carr
0.8981

3906

Mito_carr
0.887

22671

UbiH
0.8798

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLPDE_IV superfamily PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid... - 250.961 4.40E-80 75 - 393 superfamily 260277

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28585 PHATRDRAFT_28585 Not available 301638 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0004084 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004084

branched-chain-amino-acid transaminase activity

Details: 
Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid.
GO Category: 
MF

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