261878 TIGR00054
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261878 chr_3 TIGR00054 1611912 1613794 - TIGR00054

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0149

Most Highly Correlated Transcripts

1773

hypothetical protein
0.9039

261112

Nudix_Hydrolase superfamily
0.8953

10898

hypothetical protein
0.8857

6787

hypothetical protein
0.8836

34824

FtsH_fam
0.8825

263180

SufS_like
0.8808

30701

PRK05279
0.8799

6434

hypothetical protein
0.8771

31771

AarF
0.8734

7085

PI-PLCc_GDPD_SF superfamily
0.873

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane... cl10020 119.441 9.26E-32 81 - 448 specific 100084
S2P-M50 superfamily Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane... - 119.441 9.26E-32 81 - 448 superfamily 245232
TIGR00054 RIP metalloprotease RseP; Members of this nearly universal bacterial protein family are regulated... - 182.327 3.98E-52 81 - 449 multi-dom 232801

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48723 PHATRDRAFT_48723 158755 196865 452737 Cre03.g144164.t1.1 AT2G32480.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005515 GO:0004222 GO:0006508 GO:0004249 GO:0008133 GO:0008319 GO:0030402 -

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0004249

NA

Details: 
NA
GO Category: 
NA

GO:0008133

NA

Details: 
NA
GO Category: 
NA

GO:0008319

NA

Details: 
NA
GO Category: 
NA

GO:0030402

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments