262242 VL_LC_FACS_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262242 chr_4 VL_LC_FACS_like 1583799 1586188 - VL_LC_FACS_like

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0036

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0011
 0.46

Most Highly Correlated Transcripts

31011

Mito_carr
0.7723

plastidpH

0.769

34191

CobN_like
0.7659

25319

hypothetical protein
0.7519

22513

hypothetical protein
0.7331

7172

hypothetical protein
0.7307

21646

hypothetical protein
0.7297

3397

FixC
0.7293

6701

hypothetical protein
0.7251

26365

fadJ
0.7238

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
VL_LC_FACS_like Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases... cl17068 411.924 1.85E-136 104 - 665 specific 213275
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 411.924 1.85E-136 104 - 665 superfamily 266508
FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] - 414.792 1.61E-135 101 - 677 multi-dom 223953

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54151 PHATRDRAFT_54151 229452 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0005509 GO:0004467 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0004467

long-chain fatty acid-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; a long-chain fatty acid is a fatty acid with a chain length between C13 and C22.
GO Category: 
MF

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