262367 TPMThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262367	chr_5	TPM	45582	47099	-	TPM

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448440	Thaps262367.2, Thaps262367.4, Thaps262367.3, Thaps262367.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0020

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0127	0.38	0.02 2.2

Most Highly Correlated Transcripts

bd1449 (bd1449) SpoT 0.9131	30701 PRK05279 0.9011	22673 NA 0.8981	261400 NA 0.8969	25040 NA 0.896	31829 CBS_like 0.8927
4049 hypothetical protein 0.8925	16295 FBPase 0.8877	268257 fabG 0.879	37934 GRX_PICOT_like 0.8762

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPM		TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; This family has a Rossmann-like fold....	cl01535	72.6111	1.98E-16	122 - 238	specific	252657
TPM superfamily		TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; This family has a Rossmann-like fold....	-	72.6111	1.98E-16	122 - 238	superfamily	260987

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43556	PHATRDRAFT_43556	162677	258756	440267	Cre15.g636050.t1.2	AT5G52970.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments