bd1449 (bd1449) SpoT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd1449 bd_30x155 (bd1449) SpoT 101 2497 - SpoT

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0058

Most Highly Correlated Transcripts

262367

TPM
0.9131

37596

SpoT
0.8971

270251

(NTT4) hypothetical protein
0.8855

26191

asnC
0.8765

22994

DUF1295 superfamily
0.8756

268398

PRK04173
0.8752

21469

hypothetical protein
0.8748

12729

PLN02205
0.8611

16737

Mito_carr
0.8595

261451

PAP2_like superfamily
0.8573

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; This... cl11966 130.93 2.95E-35 270 - 370 specific 143389
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 130.93 2.95E-35 270 - 370 superfamily 264491
TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a... cl15768 98.7357 1.10E-24 428 - 487 specific 133438
TGS superfamily The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is... - 98.7357 1.10E-24 428 - 487 superfamily 265779
ACT_4 ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains. These ACT... cl09141 65.6342 6.46E-13 697 - 770 specific 257632
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 65.6342 6.46E-13 697 - 770 superfamily 263730
SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms /... - 748.308 0 28 - 770 multi-dom 223394

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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