262478 (apc10) APC10
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262478 chr_5 (apc10) APC10 782808 783689 - APC10

Synonyms

NCBI ID Ensembl Genomes exon ID
7446436 Thaps262478.2, Thaps262478.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0480

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0015
 0.38

Most Highly Correlated Transcripts

37118

FeThRed_B
0.9177

16114

PLN02350
0.9059

268443

SAICAR_synt_Sc
0.9053

13448

Sec1
0.8928

269624

TIM_phosphate_binding superfamily
0.892

19158

GRX_PICOT_like
0.8912

35136

NA
0.882

23806

Nuc_sug_transp
0.8806

23249

ETC_C1_NDUFA4 superfamily
0.8745

41655

Chloroa_b-bind
0.8743

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination; This... cl02148 247.086 7.13E-83 112 - 254 specific 176484
APC10-like superfamily APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination; This family... - 247.086 7.13E-83 112 - 254 superfamily 261196

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14899 PHATRDRAFT_14899 211750 156060 46713 Cre13.g571850.t1.1 AT2G18290.1 245966

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0005515 GO:0005680 GO:0030071 -

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0005680

anaphase-promoting complex

Details: 
A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. Substrate recognition by APC occurs through degradation signals, the most common of which is termed the Dbox degradation motif, originally discovered in cyclin B.
GO Category: 
CC

GO:0030071

regulation of mitotic metaphase/anaphase transition

Details: 
Any process that modulates the frequency, rate or extent of the onset of anaphase (chromosome movement) in the mitotic cell cycle.
GO Category: 
BP

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