262611 RabGAP-TBCThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262611	chr_5	RabGAP-TBC	1801283	1802616	-	RabGAP-TBC

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444856	Thaps262611.5, Thaps262611.1, Thaps262611.4, Thaps262611.6, Thaps262611.2, Thaps262611.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0089

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0164	0.39	0.00025 3400

Most Highly Correlated Transcripts

35197 CBS_pair_CAP-ED_DUF294_PBI_assoc 0.9169	bd668 (bd668) NA 0.9126	8003 PIG-L 0.9102	bd624 (bd624) Glyco_transf_34 superfamily 0.9067	bd718 (bd718) PRK10387 0.9022	12846 SNF2_N 0.8956
269281 PKc_like superfamily 0.893	37362 MCM 0.8917	31599 MoCF_BD superfamily 0.8909	38685 Kinesin 0.8868

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RabGAP-TBC		Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are...	cl02495	93.2031	6.30E-23	36 - 248	specific	249964
RabGAP-TBC superfamily		Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are...	-	93.2031	6.30E-23	36 - 248	superfamily	261308

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54901	PHATRDRAFT_54901	198130	204327	Not available	Cre03.g190450.t1.1	Not available	293891

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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