262635 (Tp_Myb3R5) SANT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262635 chr_5 (Tp_Myb3R5) SANT 1978506 1980127 + SANT

Synonyms

NCBI ID Ensembl Genomes exon ID
7444894 Thaps262635.1, Thaps262635.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0350

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9493

2058

hypothetical protein
0.8451

263917

0.7728

bd1766

(bd1766) NA
0.6364

bd672

(bd672) NA
0.6273

11655

hypothetical protein
0.6196

bd1150

(bd1150) PLN02433
0.6169

31881

(Tp_cdc5) SANT_CDC5_II
0.6152

bd460

(bd460) folC
0.614

264777

hypothetical protein
0.6111

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 59.5114 2.25E-11 278 - 324 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 59.5114 2.25E-11 278 - 324 superfamily 266586
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 59.5114 2.25E-11 278 - 324 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 59.5114 2.25E-11 278 - 324 superfamily 266586

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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