31881 (Tp_cdc5) SANT_CDC5_II
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31881 chr_2 (Tp_cdc5) SANT_CDC5_II 415784 418498 - SANT_CDC5_II

Synonyms

NCBI ID Ensembl Genomes exon ID
7442241 Thaps31881.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0286

Most Highly Correlated Transcripts

261018

PDEase_I
0.8484

263947

SNF2_N
0.8469

2958

PROCN
0.8467

35510

SET
0.843

2941

hypothetical protein
0.8393

4866

PROCN
0.8377

19360

HELICc
0.8364

35984

hypothetical protein
0.8334

11921

hypothetical protein
0.832

264869

HELICc
0.8292

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SANT_CDC5_II superfamily SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell... - 99.6913 6.03E-25 56 - 105 superfamily 212557
SANT_CDC5_II superfamily SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell... - 99.6913 6.03E-25 56 - 105 superfamily 212557
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 59.5114 4.88E-11 11 - 54 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 59.5114 4.88E-11 11 - 54 superfamily 266586
Myb_Cef superfamily pre-mRNA splicing factor component; This family is a region of the Myb-Related Cdc5p/Cef1 proteins... - 96.319 3.91E-22 521 - 726 superfamily 256654

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13192 PHATRDRAFT_13192 213642 253934 443602 Cre03.g197350.t1.2 AT1G09770.1 495212

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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