262743 Choline_transpo
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262743 chr_6 Choline_transpo 385980 387244 - Choline_transpo

Synonyms

NCBI ID Ensembl Genomes exon ID
7451151 Thaps262743.1, Thaps262743.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0205

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0242
 0.38

Most Highly Correlated Transcripts

270222

0.9519

bd1852

(bd1852) NA
0.9044

24932

Thioredoxin_like superfamily
0.8871

4270

Scramblase superfamily
0.8866

262455

COG1272
0.8804

1788

hypothetical protein
0.8752

928

LPLAT superfamily
0.8641

22820

Choline_transpo
0.8636

25042

AFD_class_I superfamily
0.8572

bd765

(bd765) NA
0.8559

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Choline_transpo superfamily Plasma-membrane choline transporter; This family represents a high-affinity plasma-membrane choline... - 255.218 1.65E-81 64 - 374 superfamily 252644
Choline_transpo superfamily Plasma-membrane choline transporter; This family represents a high-affinity plasma-membrane choline... - 255.218 1.65E-81 64 - 374 superfamily 252644

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45782 PHATRDRAFT_45782 Not available Not available 207056 Cre01.g021500.t1.1 Not available 309744

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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