22820 Choline_transpo
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22820 chr_5 Choline_transpo 1568290 1570183 - Choline_transpo

Synonyms

NCBI ID Ensembl Genomes exon ID
7448162 Thaps22820.1, Thaps22820.2, Thaps22820.4, Thaps22820.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0211

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0131
 0.35

Most Highly Correlated Transcripts

270222

0.9569

25042

AFD_class_I superfamily
0.942

25022

AFD_class_I superfamily
0.9065

5098

hypothetical protein
0.9014

11268

hypothetical protein
0.876

1850

PKc_like superfamily
0.8753

34187

(ACAS2) PRK00174
0.8707

5584

P4Hc
0.8677

4270

Scramblase superfamily
0.8651

8031

DUF1028 superfamily
0.8644

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Choline_transpo superfamily Plasma-membrane choline transporter; This family represents a high-affinity plasma-membrane choline... - 205.142 2.69E-61 146 - 465 superfamily 252644
Choline_transpo superfamily Plasma-membrane choline transporter; This family represents a high-affinity plasma-membrane choline... - 205.142 2.69E-61 146 - 465 superfamily 252644

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 226251 297527 Not available Not available Not available 474776

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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