263089 (BRAC2) BRCA-2_OB1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263089 chr_7 (BRAC2) BRCA-2_OB1 421822 428441 + BRCA-2_OB1

Synonyms

NCBI ID Ensembl Genomes exon ID
7448960 Thaps263089.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0449

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0015
 0.38

Most Highly Correlated Transcripts

264276

Vps8 superfamily
0.8839

11938

NADB_Rossmann superfamily
0.8712

263483

CHD
0.8683

38685

Kinesin
0.8645

bd731

(bd731) NA
0.8643

11613

hypothetical protein
0.8595

263051

ZntA
0.8593

12846

SNF2_N
0.8488

262611

RabGAP-TBC
0.8483

31075

PDEase_I
0.8474

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
BRCA-2_OB1 BRCA2, oligonucleotide/oligosaccharide-binding, domain 1; Members of this family assume an OB fold... cl09930 120.091 1.05E-30 1945 - 2072 specific 117663
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 120.091 1.05E-30 1945 - 2072 superfamily 263924
BRCA-2_helical superfamily BRCA2, helical; Members of this family adopt a helical structure, consisting of a four-helix... - 87.9902 6.37E-19 1829 - 1941 superfamily 117723

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 200206 185293 Not available Cre13.g566900.t1.1 AT5G01630.1 Not available

KEGG

KEGG description KEGG Pathway
Homologous recombination map03440

GO Terms

Not available -

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