263487 (Tp_AP2-EREBP12_CCHH20) pathogenesis-related transcription factor
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263487 chr_9 (Tp_AP2-EREBP12_CCHH20) pathogenesis-related transcription factor 180238 181128 + pathogenesis-related transcription factor

Synonyms

NCBI ID Ensembl Genomes exon ID
7449272 Thaps263487.2, Thaps263487.3, Thaps263487.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0170

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0007
 0.40

Most Highly Correlated Transcripts

2058

hypothetical protein
0.8868

4108

hypothetical protein
0.8274

3114

PRX_BCP
0.7794

17854

HemeO
0.6703

bd633

(bd633) NA
0.6645

10598

hypothetical protein
0.6428

36909

S_TKc
0.629

35611

PLN00158
0.6288

bd1098

(bd1098) NA
0.6205

36641

Aldolase_Class_I superfamily
0.6164

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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