35611 PLN00158
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35611 chr_7 PLN00158 867334 867696 + PLN00158

Synonyms

NCBI ID Ensembl Genomes exon ID
7449232 Thaps35611.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0095

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0008
 0.44

Most Highly Correlated Transcripts

6947

PLN00158
0.87

37309

PLN00158
0.8528

33270

PLN00157
0.8405

4358

hypothetical protein
0.8365

5551

hypothetical protein
0.8357

586

PTZ00018
0.8339

37431

PLN00157
0.8279

33906

DnaJ
0.8263

8777

SPX
0.8252

261437

hypothetical protein
0.8228

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00158 histone H2B; Provisional cl00074 172.182 6.08E-56 1 - 120 specific 215081
H4 superfamily Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic... - 172.182 6.08E-56 1 - 120 superfamily 260174

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11823 PHATRDRAFT_11823 258182 50610 362798 Cre13.g570050.t1.2 AT5G22880.1 473259

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000786 GO:0003677 GO:0005634 GO:0006334 GO:0007001 -

GO:0000786

nucleosome

Details: 
A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006334

nucleosome assembly

Details: 
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO Category: 
BP

GO:0007001

NA

Details: 
NA
GO Category: 
NA

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