263499 CdsAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263499	chr_9	CdsA	247714	248928	+	CdsA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443495	Thaps263499.3, Thaps263499.2, Thaps263499.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0276

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0070	0.44	0.00068 410

Most Highly Correlated Transcripts

270222 0.9253	7021 DUF493 0.8781	42946 PTZ00308 0.8763	40200 TRX_reduct 0.8743	24790 Nitro_FMN_reductase superfamily 0.8669	268443 SAICAR_synt_Sc 0.8661
267979 HCO3_cotransp superfamily 0.8646	7084 Cupin_8 superfamily 0.8643	268179 DTW superfamily 0.8616	24051 hypothetical protein 0.859

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CdsA		CDP-diglyceride synthetase [Lipid metabolism]	cl17511	80.4379	1.12E-17	147 - 365	specific	223648
DUF46 superfamily		Putative integral membrane protein DUF46; This archaebacterial protein has no known function. It...	-	80.4379	1.12E-17	147 - 365	superfamily	266736

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54756	PHATRDRAFT_54756	264457	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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