263872 PRK14329
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263872 chr_12 PRK14329 245737 248009 + PRK14329

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0226

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0234
 0.27

Most Highly Correlated Transcripts

5540

hypothetical protein
0.9406

20621

hypothetical protein
0.9236

25359

hypothetical protein
0.9151

4108

hypothetical protein
0.914

22840

hypothetical protein
0.9139

268136

COG1054
0.9032

20682

hypothetical protein
0.9021

21698

hypothetical protein
0.9016

23812

TrmA
0.901

22302

Peptidase_C19 superfamily
0.8966

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Elp3 Elongator protein 3, MiaB family, Radical SAM; This superfamily contains MoaA, NifB, PqqE,... cl18962 143.311 4.81E-39 341 - 585 specific 214792
DRE_TIM_metallolyase superfamily DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes 2-isopropylmalate... - 143.311 4.81E-39 341 - 585 superfamily 267315
UPF0004 superfamily Uncharacterized protein family UPF0004; This family is the N terminal half of the Prosite family.... - 118.758 1.71E-31 189 - 290 superfamily 250224
UPF0004 superfamily Uncharacterized protein family UPF0004; This family is the N terminal half of the Prosite family.... - 118.758 1.71E-31 189 - 290 superfamily 250224
PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional - 555.817 0 175 - 676 multi-dom 237676

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26780 PHATRDRAFT_26780 198780 199737 416037 Not available AT4G36390.1 536500

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005554 GO:0003824 GO:0005506 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

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