268136 COG1054Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268136	chr_1	COG1054	2765004	2766785	+	COG1054

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453423	Thaps268136.1, Thaps268136.7, Thaps268136.5, Thaps268136.6, Thaps268136.4, Thaps268136.2, Thaps268136.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0223

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0234	0.27	5.4 1.5

Most Highly Correlated Transcripts

23812 TrmA 0.9407	23242 PRK00142 0.9371	13378 PRK13762 0.9354	23210 hypothetical protein 0.9302	270004 hypothetical protein 0.9287	22627 hypothetical protein 0.9285
267979 HCO3_cotransp superfamily 0.9283	25365 hypothetical protein 0.927	270120 Uup 0.924	2392 hypothetical protein 0.9235

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RHOD superfamily		Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese...	-	134.244	1.27E-38	128 - 234	superfamily	260205
COG1054		Predicted sulfurtransferase [General function prediction only]	-	260.286	1.77E-84	8 - 326	multi-dom	223982

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_26565	PHATRDRAFT_26565	159656	176109	Not available	Not available	AT2G40760.1	247757

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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