264262 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264262	chr_14	COG3899	983861	987794	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441848	Thaps264262.3, Thaps264262.1, Thaps264262.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0474

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0073	0.47	0.000041 8.2

Most Highly Correlated Transcripts

24943 COG3899 0.9262	262797 Sec7 0.9185	21655 hypothetical protein 0.9166	9270 hypothetical protein 0.9135	37638 HrpA 0.9117	3139 hypothetical protein 0.9116
1268 hypothetical protein 0.9095	262120 ABC_ATPase superfamily 0.9035	261056 (APB3) Adaptin_N 0.9023	23130 NT_PAP_TUTase 0.9003

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	81.7401	1.97E-17	537 - 732	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	81.7401	1.97E-17	537 - 732	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	263.105	9.20E-74	538 - 1249	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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