262797 Sec7Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262797	chr_6	Sec7	625034	629220	+	Sec7

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448590	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0448

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0248	0.34	3800 40000

Most Highly Correlated Transcripts

261056 (APB3) Adaptin_N 0.9358	11371 hypothetical protein 0.9337	35129 (Tp_Myb2R9) PLN03142 0.9326	32217 MA3 0.9315	23130 NT_PAP_TUTase 0.9309	262025 GH18_chitinase-like superfamily 0.9306
262617 (Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein 0.9287	37638 HrpA 0.9273	264276 Vps8 superfamily 0.926	37366 Peptidase_C19 superfamily 0.9244

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sec7		Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central...	cl00136	189.356	1.39E-54	414 - 610	specific	238100
Sec7 superfamily		Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central...	-	189.356	1.39E-54	414 - 610	superfamily	260210

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54143	PHATRDRAFT_54143	248446	258490	455435	Not available	Not available	553660

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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