268049 (ATH1) HA2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268049 chr_1 (ATH1) HA2 1712985 1717017 + HA2

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0246

Most Highly Correlated Transcripts

23748

hypothetical protein
0.9279

24604

hypothetical protein
0.9209

5698

Rad17
0.9133

1216

hypothetical protein
0.9127

23769

hypothetical protein
0.9124

23469

Plus-3
0.9079

40925

(RPB21) PRK08565
0.9071

25633

hypothetical protein
0.9046

269821

S_TKc
0.9004

268346

hypothetical protein
0.8999

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 117.824 4.23E-30 555 - 693 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 117.824 4.23E-30 555 - 693 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 63.4108 1.37E-11 718 - 875 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 63.4108 1.37E-11 718 - 875 superfamily 238034
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 142.741 2.13E-39 930 - 1019 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 142.741 2.13E-39 930 - 1019 superfamily 262181
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 141.281 1.19E-38 1053 - 1153 superfamily 254381
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 141.281 1.19E-38 1053 - 1153 superfamily 254381
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 62.2565 1.36E-11 227 - 316 superfamily 263921
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 110.659 6.10E-27 532 - 719 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51921 PHATRDRAFT_51921 Not available Not available 457471 Cre24.g755347.t1.1 AT1G27900.1 300538

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 GO:0003723 GO:0004003 GO:0004004 GO:0008094 GO:0008186 GO:0015462 GO:0015616 GO:0016887 GO:0017116 GO:0042623 GO:0042624 GO:0042625 GO:0042626 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0004003

ATP-dependent DNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
GO Category: 
MF

GO:0004004

ATP-dependent RNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
GO Category: 
MF

GO:0008094

DNA-dependent ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO Category: 
MF

GO:0008186

RNA-dependent ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
GO Category: 
MF

GO:0015462

protein-transmembrane transporting ATPase activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + protein(out) = ADP + phosphate + protein(in).
GO Category: 
MF

GO:0015616

DNA translocase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive movement along a single- or double-stranded DNA molecule.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0017116

single-stranded DNA-dependent ATP-dependent DNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, in the presence of single-stranded DNA; drives the unwinding of a DNA helix.
GO Category: 
MF

GO:0042623

ATPase activity, coupled

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction directly drives some other reaction, for example ion transport across a membrane.
GO Category: 
MF

GO:0042624

ATPase activity, uncoupled

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction is not directly coupled to any other reaction.
GO Category: 
MF

GO:0042625

ATPase activity, coupled to transmembrane movement of ions

Details: 
Catalysis of the transfer of an ion from one side of a membrane to the other, driven by the reaction: ATP + H2O = ADP + phosphate.
GO Category: 
MF

GO:0042626

ATPase activity, coupled to transmembrane movement of substances

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO Category: 
MF

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