268060 pepsin_retropepsin_like superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268060	chr_1	pepsin_retropepsin_like superfamily	1819192	1820265	-	pepsin_retropepsin_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445299	Thaps268060.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0089

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0256	0.42	0.0000000000014 1.1

Most Highly Correlated Transcripts

10873 NA 0.8744	bd1465 (bd1465) PKc_like superfamily 0.8479	bd894 (bd894) Peptidase_M14_like superfamily 0.845	262611 RabGAP-TBC 0.8406	261357 NAD_binding_8 superfamily 0.8351	37362 MCM 0.8337
2519 hypothetical protein 0.8266	37621 Ptr 0.8237	36223 CAP_ED 0.8213	37336 Beach 0.8213

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
pepsin_retropepsin_like superfamily		Cellular and retroviral pepsin-like aspartate proteases; This family includes both cellular and...	-	127.11	1.63E-33	122 - 343	superfamily	264354

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004190 GO:0009049 GO:0042499 GO:0042500 -

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