268232 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268232	chr_2	COG3899	746839	750567	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446511	Thaps268232.1, Thaps268232.5, Thaps268232.2, Thaps268232.7, Thaps268232.6, Thaps268232.3, Thaps268232.4, Thaps268232.9, Thaps268232.8

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0397

Most Highly Correlated Transcripts

261448 PLN02205 0.9412	24682 hypothetical protein 0.9345	2742 DUF1336 superfamily 0.9311	25288 Sec6 superfamily 0.929	262501 hypothetical protein 0.9276	9677 hypothetical protein 0.9213
21220 KU superfamily 0.9213	4873 hypothetical protein 0.9189	262287 hypothetical protein 0.9189	36372 S_TKc 0.9182

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	89.8293	1.88E-20	4 - 190	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	89.8293	1.88E-20	4 - 190	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	333.211	2.50E-99	2 - 830	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49028	PHATRDRAFT_49028	245353	227578	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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