268256 PLN02346
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268256 chr_2 PLN02346 942119 943317 + PLN02346

Synonyms

NCBI ID Ensembl Genomes exon ID
7450256 Thaps268256.2, Thaps268256.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0108
 0.45

Most Highly Correlated Transcripts

6610

hypothetical protein
0.914

261633

(CTS2) cysS
0.9013

37539

cpn10
0.8932

40034

thrS
0.8914

6028

NA
0.8883

6010

AP_muniscins_like_MHD
0.8755

269004

PRTases_typeI
0.8748

bd1652

(bd1652) ABC_ATPase superfamily
0.8685

37166

(RK17) rplQ
0.8676

511

(GBP1) PRK09601
0.8675

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NTP-PPase_His4 Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in His4-like... cl16941 141.652 2.21E-42 162 - 245 specific 212153
NTP-PPase superfamily Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain superfamily; This... - 141.652 2.21E-42 162 - 245 superfamily 266492
PRA-CH superfamily Phosphoribosyl-AMP cyclohydrolase; This enzyme catalyses the third step in the histidine... - 118.177 4.54E-33 64 - 159 superfamily 260371
PLN02346 histidine biosynthesis bifunctional protein hisIE - 334.483 4.64E-115 26 - 262 multi-dom 215196

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_3140 PHATR_3140 193987 148453 454980 Cre13.g576650.t1.2 AT1G31860.1 351968

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0000105 GO:0004635 GO:0004636 -

GO:0000105

histidine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
GO Category: 
BP

GO:0004635

phosphoribosyl-AMP cyclohydrolase activity

Details: 
Catalysis of the reaction: 1-(5-phosphonatoribosyl)-5'-AMP + H(2)O = 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide.
GO Category: 
MF

GO:0004636

phosphoribosyl-ATP diphosphatase activity

Details: 
Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + H(2)O = 1-(5-phosphonatoribosyl)-5'-AMP + diphosphate + H(+).
GO Category: 
MF

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