268270 Patched
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268270 chr_2 Patched 1093518 1095919 + Patched

Synonyms

NCBI ID Ensembl Genomes exon ID
7444647 Thaps268270.3, Thaps268270.1, Thaps268270.4, Thaps268270.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0034

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0239
 0.34

Most Highly Correlated Transcripts

24832

hypothetical protein
0.9001

ThpsCp134

(rpl34) ribosomal protein L34
0.8977

40597

RPE65 superfamily
0.895

6610

hypothetical protein
0.873

261407

NAD_binding_8 superfamily
0.8685

3462

hypothetical protein
0.8678

ThpsCp082

(rpl34) ribosomal protein L34
0.8638

5078

PLN02530
0.8628

40725

(cdc48-2) CDC48
0.8578

37288

PLN02487
0.8576

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sterol-sensing superfamily Sterol-sensing domain of SREBP cleavage-activation; Sterol regulatory element-binding proteins (... - 134.639 7.10E-37 10 - 165 superfamily 256997
Patched Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog.... - 234.562 6.31E-67 14 - 566 multi-dom 251310

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_33867 PHATRDRAFT_33867 146864 Not available 237489 Cre02.g093500.t1.2 AT4G38350.1 564545

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008158 GO:0016020 -

GO:0008158

hedgehog receptor activity

Details: 
Combining with a member of the hedgehog protein family and transmitting the signal across the membrane to initiate a change in cell activity.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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