268695 PRK07198
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268695 chr_4 PRK07198 1141425 1143133 - PRK07198

Synonyms

NCBI ID Ensembl Genomes exon ID
7447963 Thaps268695.2, Thaps268695.1, Thaps268695.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0144

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0161
 0.36

Most Highly Correlated Transcripts

bd410

(bd410) HNHc
0.9384

9173

hypothetical protein
0.932

20708

MPP_ACP5
0.921

bd1941

(bd1941) NA
0.9176

bd415

(bd415) arom_aa_hydroxylase superfamily
0.917

bd1841

(bd1841) CAP10 superfamily
0.9019

28651

(AAT1_1) PLN02644
0.8953

41425

MDH_cytoplasmic_cytosolic
0.8918

22671

UbiH
0.8734

22867

hypothetical protein
0.8669

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GTP_CH_N superfamily GTP cyclohydrolase N terminal; This domain family is found in bacteria and eukaryotes, and is... - 346.904 3.07E-118 26 - 215 superfamily 257073
GTP_CH_N superfamily GTP cyclohydrolase N terminal; This domain family is found in bacteria and eukaryotes, and is... - 346.904 3.07E-118 26 - 215 superfamily 257073
GTP_cyclohydro2 superfamily GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino... - 171.529 1.44E-50 185 - 405 superfamily 260476
PRK07198 hypothetical protein; Validated - 715.282 0 20 - 438 multi-dom 235959

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42619 PHATRDRAFT_42619 210194 322156 309124 Not available Not available 349796

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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