Thaps_bicluster_0161 Residual: 0.36
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0161 0.36 Thalassiosira pseudonana
" class="views-fluidgrid-wrapper clear-block">
Displaying 1 - 26 of 26
" class="views-fluidgrid-wrapper clear-block">
12021 hypothetical protein

12021 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12021
1274 hypothetical protein

1274 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1274
20708 MPP_ACP5

20708 - MPP_ACP5

GO Terms:

GO:0016787, GO:0003993

CD Domains:

Go To Gene Page:

20708
21033 lipoyl_domain

21033 - lipoyl_domain

GO Terms:

GO:0004742, GO:0009351, GO:0030523

CD Domains:

Go To Gene Page:

21033
21136 hypothetical protein

21136 - hypothetical protein

GO Terms:

GO:0005489, GO:0006118

CD Domains:

Go To Gene Page:

21136
21240 hypothetical protein

21240 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21240
22234 sensory_box

22234 - sensory_box

GO Terms:

GO:0004871, GO:0007165, GO:0000155, GO:0000160

CD Domains:

Go To Gene Page:

22234
22735 hypothetical protein

22735 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22735
24460 hypothetical protein

24460 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24460
262530 TB2_DP1_HVA22

262530 - TB2_DP1_HVA22

GO Terms:

NA

CD Domains:

Go To Gene Page:

262530
263178 (HCD1) NADB_Rossmann superfamily

263178 - (HCD1) NADB_Rossmann superfamily

GO Terms:

GO:0008152, GO:0016491

CD Domains:

Go To Gene Page:

263178
264533 (Tp_bZIP13) basic leucine zipper protein smilarity, DNA binding, transcription factor

264533 - (Tp_bZIP13) basic leucine zipper protein smilarity, DNA binding, transcription factor

GO Terms:

GO:0003677, GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

264533
268625 v-snare protein, Vti1 C-terminal half-like protein

268625 - v-snare protein, Vti1 C-terminal half-like protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268625
268695 PRK07198

268695 - PRK07198

GO Terms:

NA

CD Domains:

Go To Gene Page:

268695
3275 TLDc

3275 - TLDc

GO Terms:

NA

CD Domains:

Go To Gene Page:

3275
32789 (PCC1) COG4799

32789 - (PCC1) COG4799

GO Terms:

GO:0016874, GO:0003989, GO:0006633, GO:0009317, GO:0004658

CD Domains:

Go To Gene Page:

32789
35360 Autophagy_N

35360 - Autophagy_N

GO Terms:

NA

CD Domains:

Go To Gene Page:

35360
3702 hypothetical protein

3702 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3702
37058 TRX_family

37058 - TRX_family

GO Terms:

GO:0005489, GO:0006118, GO:0004791

CD Domains:

Go To Gene Page:

37058
4007 MDR1

4007 - MDR1

GO Terms:

GO:0008270, GO:0016491

CD Domains:

Go To Gene Page:

4007
41425 MDH_cytoplasmic_cytosolic

41425 - MDH_cytoplasmic_cytosolic

GO Terms:

GO:0004553, GO:0005975, GO:0006100, GO:0016491, GO:0006108, GO:0016615, GO:0030060

CD Domains:

Go To Gene Page:

41425
41632 Asp

41632 - Asp

GO Terms:

GO:0004194, GO:0006508, GO:0004190, GO:0004192

CD Domains:

Go To Gene Page:

41632
42646 PRK04342

42646 - PRK04342

GO Terms:

GO:0003677, GO:0003918, GO:0005524, GO:0006259, GO:0006265, GO:0007131

CD Domains:

Go To Gene Page:

42646
6087 hypothetical protein

6087 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6087
7645 Aldo_ket_red superfamily

7645 - Aldo_ket_red superfamily

GO Terms:

GO:0016491

CD Domains:

Go To Gene Page:

7645
9911 hypothetical protein

9911 - hypothetical protein

GO Terms:

GO:0008757, GO:0004719, GO:0006464

CD Domains:

Go To Gene Page:

9911
GO ID Go Term p-value q-value Cluster
GO:0007131 meiotic recombination 0.0031011 1 Thaps_bicluster_0161
GO:0006100 tricarboxylic acid cycle intermediate metabolism 0.00619321 1 Thaps_bicluster_0161
GO:0006108 malate metabolism 0.00927638 1 Thaps_bicluster_0161
GO:0006265 DNA topological change 0.0306099 1 Thaps_bicluster_0161
GO:0006259 DNA metabolism 0.0426071 1 Thaps_bicluster_0161
GO:0006633 fatty acid biosynthesis 0.0574088 1 Thaps_bicluster_0161
GO:0000160 two-component signal transduction system (phosphorelay) 0.080648 1 Thaps_bicluster_0161
GO:0007165 signal transduction 0.117274 1 Thaps_bicluster_0161
GO:0006464 protein modification 0.168362 1 Thaps_bicluster_0161
GO:0006118 electron transport 0.198115 1 Thaps_bicluster_0161
Log in to post comments