268746 SXM1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268746 chr_4 SXM1 1739338 1742906 - SXM1

Synonyms

NCBI ID Ensembl Genomes exon ID
7451930 Thaps268746.3, Thaps268746.1, Thaps268746.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0278
 0.24

Most Highly Correlated Transcripts

23966

hypothetical protein
0.9037

24655

hypothetical protein
0.8993

14890

Cupin_8 superfamily
0.8944

21190

SAC3_GANP
0.894

23105

Peptidase_S74
0.8896

11941

hypothetical protein
0.883

21568

hypothetical protein
0.8825

268486

Glyco_transf_22 superfamily
0.8824

263644

(TopoII_2) PLN03128
0.8818

6012

hypothetical protein
0.8802

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover,... - 365.714 2.74E-109 12 - 970 multi-dom 227943

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26387 PHATRDRAFT_26387 195836 63405 Not available Cre13.g562450.t1.2 AT3G59020.1 318393

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000059 GO:0005634 GO:0005643 GO:0005737 GO:0008565 GO:0006508 GO:0008237 GO:0008270 -

GO:0000059

protein import into nucleus, docking

Details: 
A protein complex assembly process that contributes to protein import into the nucleus, and that results in the association of a cargo protein, a carrier protein such as an importin alpha/beta heterodimer, and a nucleoporin located at the periphery of the nuclear pore complex.
GO Category: 
BP

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005643

nuclear pore

Details: 
Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
GO Category: 
CC

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0008565

protein transporter activity

Details: 
Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

Add comment

Log in to post comments