268793 (AMT6) amt
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268793 chr_4 (AMT6) amt 2293792 2296192 + amt

Synonyms

NCBI ID Ensembl Genomes exon ID
7452262 Thaps268793.1, Thaps268793.2, Thaps268793.4, Thaps268793.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0280

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0075
 0.50

Most Highly Correlated Transcripts

16295

FBPase
0.8899

21611

Peptidase_C1A
0.8641

270222

0.8509

3148

Peptidase_C1A
0.8499

13448

Sec1
0.8463

4182

DUF3633 superfamily
0.8301

2186

ERG4_ERG24 superfamily
0.8266

10903

hypothetical protein
0.8253

bd1821

(bd1821) NA
0.8214

20963

Tic22 superfamily
0.8195

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
amt ammonium transporter; The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally... cl03012 358.504 6.68E-118 53 - 480 specific 233145
Ammonium_transp superfamily Ammonium Transporter Family; Ammonium Transporter Family. - 358.504 6.68E-118 53 - 480 superfamily 261545

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 195049 258485 Not available Cre09.g400750.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006810 GO:0008519 GO:0016020 -

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008519

ammonium transmembrane transporter activity

Details: 
Catalysis of the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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