269064 Nup84_Nup100 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269064	chr_6	Nup84_Nup100 superfamily	831510	834114	-	Nup84_Nup100 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443612	Thaps269064.5, Thaps269064.2, Thaps269064.4, Thaps269064.3, Thaps269064.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0254

Most Highly Correlated Transcripts

262371 AAA_12 superfamily 0.9317	26806 PTZ00416 0.9226	23270 hypothetical protein 0.9124	21265 hypothetical protein 0.9094	23269 hypothetical protein 0.9054	21546 hypothetical protein 0.9045
12836 EEP superfamily 0.9022	20773 hypothetical protein 0.9021	40925 (RPB21) PRK08565 0.8976	262348 53EXOc 0.8929

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Nup84_Nup100 superfamily		Nuclear pore protein 84 / 107; Nup84p forms a complex with five proteins, of which Nup120p, Nup85p...	-	174.845	1.80E-46	67 - 723	superfamily	252391

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46440	PHATRDRAFT_46440	269629	328864	Not available	Not available	Not available	311060

KEGG

KEGG description	KEGG Pathway
RNA transport	map03013

GO Terms

Not available -

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