11367 GH_J
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11367 chr_19c_29 GH_J 172257 175928 + GH_J

Synonyms

NCBI ID Ensembl Genomes exon ID
7444403 Thaps11367.3, Thaps11367.2, Thaps11367.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0326

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0135
 0.41

Most Highly Correlated Transcripts

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9399

bd1934

(bd1934) NA
0.9012

bd643

(bd643) NA
0.9003

bd690

(bd690) NA
0.8933

bd1841

(bd1841) CAP10 superfamily
0.8878

10533

hypothetical protein
0.8839

bd410

(bd410) HNHc
0.8787

23872

GLTP superfamily
0.8533

23897

hypothetical protein
0.8492

bd1756

(bd1756) NA
0.8441

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J; This glycosyl hydrolase family clan... cl14647 85.57 3.80E-18 1020 - 1159 specific 185720
GH43_62_32_68 superfamily Glycosyl hydrolase families: GH43, GH62, GH32, GH68; Members of the glycosyl hydrolase families 32... - 85.57 3.80E-18 1020 - 1159 superfamily 265439
Bac_rhamnosid superfamily Bacterial alpha-L-rhamnosidase; This family consists of bacterial rhamnosidase A and B enzymes. L-... - 84.6303 4.60E-17 384 - 849 superfamily 253267

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments