270000 COG1293
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
270000 chr_19c_29 COG1293 77458 81409 + COG1293

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0153

Most Highly Correlated Transcripts

41117

PRP1_N
0.9165

21334

hypothetical protein
0.9017

40200

TRX_reduct
0.9003

5875

hypothetical protein
0.8987

269063

ArsB_NhaD_permease superfamily
0.8979

262371

AAA_12 superfamily
0.8964

10487

hypothetical protein
0.893

268346

hypothetical protein
0.893

22723

hypothetical protein
0.8922

23560

hypothetical protein
0.8899

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DUF3441 superfamily Domain of unknown function (DUF3441); This presumed domain is functionally uncharacterized. This... - 116.279 3.66E-30 852 - 947 superfamily 256729
DUF3441 superfamily Domain of unknown function (DUF3441); This presumed domain is functionally uncharacterized. This... - 116.279 3.66E-30 852 - 947 superfamily 256729
DUF814 superfamily Domain of unknown function (DUF814); This domain occurs in proteins that have been annotated as... - 85.7244 1.17E-19 499 - 606 superfamily 253311
COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] - 166.799 1.42E-43 1 - 629 multi-dom 224212

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42643 PHATRDRAFT_42643 202376 217046 Not available Cre17.g734961.t1.1 AT5G49930.1 557667

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0006508 GO:0004431 GO:0016308 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0004431

NA

Details: 
NA
GO Category: 
NA

GO:0016308

1-phosphatidylinositol-4-phosphate 5-kinase activity

Details: 
Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4-phosphate + ATP = 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ADP + 2 H(+).
GO Category: 
MF

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