27048 TM_PBP1_branched-chain-AA_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
27048	chr_2	TM_PBP1_branched-chain-AA_like superfamily	883248	884547	-	TM_PBP1_branched-chain-AA_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450242	Thaps27048.1, Thaps27048.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0033

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0067	0.47	12 0.35

Most Highly Correlated Transcripts

9569 hypothetical protein 0.9298	24124 hypothetical protein 0.9148	30149 Solute_trans_a 0.9054	263655 NAD_binding_8 superfamily 0.9036	38743 S_TKc 0.9035	32503 LETM1 superfamily 0.9033
263979 PKc_like superfamily 0.8982	7299 hypothetical protein 0.898	8003 PIG-L 0.8954	8067 Na_Ca_ex 0.8911

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TM_PBP1_branched-chain-AA_like superfamily		Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC...	-	132.42	1.54E-34	29 - 359	superfamily	260432

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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