27236 TPRThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
27236	chr_2	TPR	2081612	2082312	+	TPR

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452502	Thaps27236.2, Thaps27236.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0285

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0039	0.52	1.1 1.5

Most Highly Correlated Transcripts

38472 HA2 0.8774	7929 hypothetical protein 0.8751	bd1098 (bd1098) NA 0.872	36007 Aldolase_II superfamily 0.8701	30701 PRK05279 0.8677	4295 hypothetical protein 0.867
31150 rpsI 0.8663	269925 AAA_12 superfamily 0.8651	36525 PRK09427 0.8633	261490 HemK 0.8562

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	70.1015	6.44E-16	72 - 166	superfamily	238112
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	70.1015	6.44E-16	72 - 166	superfamily	238112

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	186750	264412	Not available	Cre10.g434800.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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