27414 (NRT1) 2A0108
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
27414 chr_3 (NRT1) 2A0108 846551 848391 - 2A0108

Synonyms

NCBI ID Ensembl Genomes exon ID
7448722 Thaps27414.1, Thaps27414.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0360

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0038
 0.59

Most Highly Correlated Transcripts

269274

(NRT2) 2A0108
0.956

bd1806

(bd1806) AAT_I superfamily
0.8473

5394

hypothetical protein
0.8464

21623

hypothetical protein
0.837

262125

(NIR_2) PLN02431
0.8247

24172

hypothetical protein
0.8191

3393

Form_Nir_trans
0.8161

20827

hypothetical protein
0.8105

25299

PLN02252
0.8081

5424

hypothetical protein
0.8009

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 90.0657 4.79E-20 50 - 437 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 90.0657 4.79E-20 50 - 437 superfamily 119392
2A0108 nitrite extrusion protein (nitrite facilitator); [Transport and binding proteins, Anions]. - 287.694 1.84E-92 44 - 404 multi-dom 233170

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54101 PHATRDRAFT_54101 229932 Not available 62811 Not available Not available 317694

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0015103 GO:0015698 GO:0016021 GO:0005215 GO:0006810 -

GO:0015103

inorganic anion transmembrane transporter activity

Details: 
Catalysis of the transfer of inorganic anions from one side of a membrane to the other. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage.
GO Category: 
MF

GO:0015698

inorganic anion transport

Details: 
The directed movement of inorganic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

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