28125 PLN00203
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28125 chr_4 PLN00203 2351634 2353431 - PLN00203

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps28125.2, Thaps28125.1, Thaps28125.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0001

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0067
 0.47

Most Highly Correlated Transcripts

270328

hypothetical protein
0.9865

12089

DUF1995 superfamily
0.9485

8329

GH_J
0.9399

37725

Coq4 superfamily
0.9291

3483

hypothetical protein
0.9184

4379

RAP
0.9168

263658

GUN4
0.9129

11086

hypothetical protein
0.9089

3541

hypothetical protein
0.9062

3186

hypothetical protein
0.9058

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase; Glutamyl-tRNA reductase catalyzes the conversion of... cl17226 296.485 1.45E-96 42 - 362 specific 133452
NAD_bind_amino_acid_DH superfamily NAD(P) binding domain of amino acid dehydrogenase-like proteins; Amino acid dehydrogenase(DH)-like... - 296.485 1.45E-96 42 - 362 superfamily 266569
GlutR_dimer superfamily Glutamyl-tRNAGlu reductase, dimerization domain; Glutamyl-tRNAGlu reductase, dimerization domain. - 88.3805 3.66E-21 365 - 468 superfamily 250100
GlutR_dimer superfamily Glutamyl-tRNAGlu reductase, dimerization domain; Glutamyl-tRNAGlu reductase, dimerization domain. - 88.3805 3.66E-21 365 - 468 superfamily 250100
PLN00203 glutamyl-tRNA reductase - 681.859 0 1 - 472 multi-dom 215101

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54134 PHATRDRAFT_54134 240131 317251 462917 Cre07.g342150.t1.2 AT1G58290.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006779 GO:0008883 -

GO:0006779

porphyrin-containing compound biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
GO Category: 
BP

GO:0008883

glutamyl-tRNA reductase activity

Details: 
Catalysis of the reaction: (S)-4-amino-5-oxopentanoate + NADP(+) + tRNA(Glu) = L-glutamyl-tRNA(Glu) + H(+) + NADPH.
GO Category: 
MF

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