4379 RAPThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4379	chr_4	RAP	875142	877895	+	RAP

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453338	Thaps4379.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0017

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0203	0.30	0.00019 0.029

Most Highly Correlated Transcripts

4440 hypothetical protein 0.9424	574 PRK05444 0.9336	36235 p450 superfamily 0.9329	5380 DUF1092 superfamily 0.9251	11822 hypothetical protein 0.9215	261608 PLN02585 0.9214
bd1216 (bd1216) Delta6-FADS-like 0.9183	28125 PLN00203 0.9168	23291 hypothetical protein 0.9167	37534 MRP-like 0.9153

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RAP		RAP domain; This domain is found in various eukaryotic species, where it is found in proteins that...	cl17746	60.6639	2.72E-11	813 - 887	specific	254762
RAP superfamily		RAP domain; This domain is found in various eukaryotic species, where it is found in proteins that...	-	60.6639	2.72E-11	813 - 887	superfamily	266808

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_31474	PHATRDRAFT_31474	202326	196289	232078	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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