28334 (GAPD4) PTZ00023
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28334 chr_5 (GAPD4) PTZ00023 1304438 1305888 + PTZ00023

Synonyms

NCBI ID Ensembl Genomes exon ID
7453188 Thaps28334.3, Thaps28334.1, Thaps28334.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0205

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0240
 0.25

Most Highly Correlated Transcripts

9947

hypothetical protein
0.9321

21978

hypothetical protein
0.9213

40713

SodA
0.9209

25116

(PGK5) Phosphoglycerate_kinase
0.919

34187

(ACAS2) PRK00174
0.9179

38266

(GPI1) pgi
0.9176

22860

hypothetical protein
0.9066

17961

BI-1-like superfamily
0.9029

8524

pntA
0.8929

1011

DSPc superfamily
0.888

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding... cl19935 258.638 7.70E-86 163 - 322 specific 251539
Gp_dh_C superfamily Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding... - 258.638 7.70E-86 163 - 322 superfamily 268288
Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; GAPDH is a tetrameric NAD-binding... cl17742 222.767 4.86E-72 3 - 158 specific 249536
Gp_dh_N superfamily Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; GAPDH is a tetrameric NAD-binding... - 222.767 4.86E-72 3 - 158 superfamily 266804
PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional - 501.672 1.38E-178 1 - 343 multi-dom 173322

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29456 PHATRDRAFT_29456 269867 187507 Not available Not available Not available 285579

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004365 GO:0006096 GO:0051287 GO:0006006 GO:0008943 -

GO:0004365

glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity

Details: 
Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
GO Category: 
MF

GO:0006096

glycolysis

Details: 
The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.
GO Category: 
BP

GO:0051287

NAD binding

Details: 
Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO Category: 
MF

GO:0006006

glucose metabolic process

Details: 
The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
GO Category: 
BP

GO:0008943

NA

Details: 
NA
GO Category: 
NA

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