28769 (SEC61-2) PTZ00219
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28769 chr_6 (SEC61-2) PTZ00219 1613147 1614690 - PTZ00219

Synonyms

NCBI ID Ensembl Genomes exon ID
7442770 Thaps28769.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0190

Most Highly Correlated Transcripts

40200

TRX_reduct
0.9057

36007

Aldolase_II superfamily
0.8979

270222

0.8961

267979

HCO3_cotransp superfamily
0.8959

35136

NA
0.8942

24218

hypothetical protein
0.8875

4142

LRR_RI superfamily
0.8874

4612

hypothetical protein
0.8829

13794

WD40
0.8813

268443

SAICAR_synt_Sc
0.8791

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SecY superfamily SecY translocase; SecY translocase. - 220.093 7.72E-67 73 - 458 superfamily 249786
SecY superfamily SecY translocase; SecY translocase. - 220.093 7.72E-67 73 - 458 superfamily 249786
Plug_translocon superfamily Plug domain of Sec61p; The Sec61/SecY translocon mediates translocation of proteins across the... - 63.983 4.16E-13 38 - 72 superfamily 256059
Plug_translocon superfamily Plug domain of Sec61p; The Sec61/SecY translocon mediates translocation of proteins across the... - 63.983 4.16E-13 38 - 72 superfamily 256059
PTZ00219 Sec61 alpha subunit; Provisional - 728.727 0 1 - 468 multi-dom 185519

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 192607 457349 Cre03.g171350.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Phagosome map04145

GO Terms

GO:0009306 GO:0015450 GO:0016020 -

GO:0009306

protein secretion

Details: 
The controlled release of proteins from a cell.
GO Category: 
BP

GO:0015450

P-P-bond-hydrolysis-driven protein transmembrane transporter activity

Details: 
Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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