29950 PTZ00018
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29950 chr_14 PTZ00018 227343 228359 + PTZ00018

Synonyms

NCBI ID Ensembl Genomes exon ID
7450847 Thaps29950.2, Thaps29950.1, Thaps29950.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0401

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0029
 0.39

Most Highly Correlated Transcripts

268257

fabG
0.8822

37118

FeThRed_B
0.8791

2731

hypothetical protein
0.8765

18662

ADK
0.8708

267971

MORN superfamily
0.8605

10948

hypothetical protein
0.8581

269624

TIM_phosphate_binding superfamily
0.8533

22592

CBS_pair_10
0.8512

16114

PLN02350
0.8504

6698

hypothetical protein
0.8481

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
H3 Histone H3; Histone H3. cl00074 184.574 8.60E-61 34 - 136 specific 128705
H4 superfamily Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic... - 184.574 8.60E-61 34 - 136 superfamily 260174
PTZ00018 histone H3; Provisional - 252.903 3.98E-87 1 - 136 multi-dom 185400

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21239 PHATRDRAFT_21239 220288 24264 Not available Not available AT5G10980.1 354087

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000786 GO:0003677 GO:0005634 GO:0006334 GO:0007001 -

GO:0000786

nucleosome

Details: 
A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006334

nucleosome assembly

Details: 
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO Category: 
BP

GO:0007001

NA

Details: 
NA
GO Category: 
NA

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