30301 PLN03206
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30301 chr_17 PLN03206 399247 403634 - PLN03206

Synonyms

NCBI ID Ensembl Genomes exon ID
7442123 Thaps30301.1, Thaps30301.3, Thaps30301.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0190
 0.26

Most Highly Correlated Transcripts

bd1828

(bd1828) NA
0.9273

23862

Syo1_like superfamily
0.9164

bd1515

(bd1515) Adenylsuccinate_lyase_2
0.899

262326

ran binding protein 4-like protein
0.8937

260923

BcrAD_BadFG superfamily
0.8912

4624

SrmB
0.8858

20985

COG5593
0.8845

269966

(VTS1) PTZ00419
0.88

38776

BOP1NT
0.877

6250

reductase
0.8724

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR... cl10019 361.404 6.22E-114 226 - 620 specific 100034
PurM-like superfamily AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen... - 240.9 1.76E-71 702 - 976 superfamily 263946
GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide... cl00020 315.709 1.28E-98 1060 - 1315 specific 153211
GAT_1 superfamily Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1... - 315.709 1.28E-98 1060 - 1315 superfamily 260141
PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat.... cl10019 240.9 1.76E-71 702 - 976 specific 100035
PurM-like superfamily AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen... - 240.9 1.76E-71 702 - 976 superfamily 263946
PLN03206 phosphoribosylformylglycinamidine synthase; Provisional - 2457.26 0 15 - 1319 multi-dom 178745

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17772 PHATRDRAFT_17772 275387 5808 456050 Cre08.g364800.t1.2 AT1G74260.1 544320

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0004642 GO:0006189 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0004642

phosphoribosylformylglycinamidine synthase activity

Details: 
Catalysis of the reaction: N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide + L-glutamine + ATP + H(2)O = 2-(formamido)-N(1)-(5-phospho-D-ribosyl)acetamidine + L-glutamate + ADP + 2 H(+) + phosphate.
GO Category: 
MF

GO:0006189

'de novo' IMP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
GO Category: 
BP

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