30804 AdoMet_dcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
30804	chr_1	AdoMet_dc	486798	488138	+	AdoMet_dc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449122	Thaps30804.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0463

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0030	0.47	0.00000015 1000

Most Highly Correlated Transcripts

32704 PKc_like superfamily 0.9221	5801 hypothetical protein 0.8882	264576 lysozyme_like superfamily 0.8827	25527 hypothetical protein 0.8761	267946 hypothetical protein 0.875	31166 AdoMet_dc superfamily 0.8726
263963 Adaptin_N 0.8714	22666 hypothetical protein 0.8683	269307 hypothetical protein 0.8683	269233 (Tp_HSF_3.4d) HSF_DNA-bind 0.8652

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AdoMet_dc		S-adenosylmethionine decarboxylase; This family contains several S-adenosylmethionine decarboxylase...	cl00687	101.425	4.47E-26	230 - 305	specific	251466
AdoMet_dc superfamily		S-adenosylmethionine decarboxylase; This family contains several S-adenosylmethionine decarboxylase...	-	101.425	4.47E-26	230 - 305	superfamily	260572

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	145312	214583	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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