269233 (Tp_HSF_3.4d) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269233 chr_7 (Tp_HSF_3.4d) HSF_DNA-bind 736026 737325 + HSF_DNA-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7449205 Thaps269233.1, Thaps269233.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0463

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0158
 0.37

Most Highly Correlated Transcripts

267946

hypothetical protein
0.9142

38907

Abhydrolase_5
0.8968

261063

Lactamase_B_2
0.895

32704

PKc_like superfamily
0.885

32217

MA3
0.8732

25647

hypothetical protein
0.8727

262141

(Tp_AP2-EREBP5) pathogenesis-related transcription factor
0.8677

30804

AdoMet_dc
0.8652

10873

NA
0.8651

263963

Adaptin_N
0.8649

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 98.341 5.56E-26 86 - 178 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 98.341 5.56E-26 86 - 178 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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