31047 BrixThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
31047	chr_1	Brix	1092305	1093546	-	Brix

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449171	Thaps31047.1, Thaps31047.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0221

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0101	0.32	0.0013 0.0095

Most Highly Correlated Transcripts

23336 SRP40_C superfamily 0.9497	32158 NOC3 0.9375	29018 NMD3 0.9342	34006 Sun 0.9328	23900 hypothetical protein 0.9304	268145 PLN00040 0.9302
bd1709 (bd1709) NA 0.9289	261145 Lactamase_B superfamily 0.9271	36434 DUF1253 0.9268	23354 RNA-binding protein of the pumilio family 0.9261

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Brix		Brix domain; Brix domain.	cl00935	107.737	8.34E-28	1 - 165	specific	252591
Brix superfamily		Brix domain; Brix domain.	-	107.737	8.34E-28	1 - 165	superfamily	260706

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_27905	PHATRDRAFT_27905	278118	324143	54328	Cre10.g450879.t1.2	AT5G61770.3	358211

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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