3143 (DES9) Delta12-FADS-like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3143 chr_3 (DES9) Delta12-FADS-like 236456 237989 + Delta12-FADS-like

Synonyms

NCBI ID Ensembl Genomes exon ID
7441723 Thaps3143.2, Thaps3143.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0014

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0239
 0.34

Most Highly Correlated Transcripts

24832

hypothetical protein
0.9284

23291

hypothetical protein
0.9217

270312

hypothetical protein
0.9006

10943

(DXR1) PLN02696
0.8949

269393

(SQDB1) PLN02572
0.8877

270213

(Hlip2) high light induced protein 2
0.8873

31851

BKR_SDR_c
0.8861

270396

hypothetical protein
0.8859

bd2050

(bd2050) rpoC2
0.8841

31636

Aldose_epim superfamily
0.8838

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes,... cl00615 213.241 9.19E-66 105 - 418 specific 239584
Membrane-FADS-like superfamily The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane... - 213.241 9.19E-66 105 - 418 superfamily 260534

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48423 PHATRDRAFT_48423 178606 244347 76102 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016491 GO:0006636 GO:0016020 GO:0016717 GO:0016215 GO:0018688 GO:0018689 GO:0042389 -

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0006636

unsaturated fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016717

oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.
GO Category: 
MF

GO:0016215

acyl-CoA desaturase activity

Details: 
Catalysis of the reaction: acyl-CoA + reduced acceptor + O2 = desaturated-acyl-CoA + acceptor + 2 H2O.
GO Category: 
MF

GO:0018688

DDT 2,3-dioxygenase activity

Details: 
Catalysis of the reaction: 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane + O2 + 2 H+ + 2 e- = cis-2,3-dihydrodiol DDT. 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane is also known as DDT.
GO Category: 
MF

GO:0018689

naphthalene disulfonate 1,2-dioxygenase activity

Details: 
Catalysis of the reaction: (1/2)-unsubstituted naphthalenoid-(2/1)-sulfonate + 2 H+ + 2 e- + O2 = 1,2-dihydroxynaphthalene derivative + HSO3(-). Substrates include naphthalene-1,6-disulfonate (forms 1,2-dihydroxynaphthalene-6-sulfonate), naphthalene-1-sulfonate (forms 1,2-dihydroxynaphthalene), naphthalene-2,6-disulfonate (forms 1,2-dihydroxynaphthalene-6-sulfonate) and naphthalene-2-sulfonate (forms 1,2-dihydroxynaphthalene).
GO Category: 
MF

GO:0042389

omega-3 fatty acid desaturase activity

Details: 
Catalysis of the introduction of an omega-3 double bond into the fatty acid hydrocarbon chain.
GO Category: 
MF

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