11501 (FCP3) Chloroa_b-bindThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11501	chr_20	(FCP3) Chloroa_b-bind	291535	292538	+	Chloroa_b-bind

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448517	Thaps11501.3, Thaps11501.1, Thaps11501.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0262	0.15	400 2500

Most Highly Correlated Transcripts

bd218 (bd218) Chloroa_b-bind superfamily 0.9938	bd1820 (bd1820) Fasciclin 0.9917	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9882	24080 (Lhcr1) fucoxanthin chl a/c light-harvesting protein, lhcr type 0.9868	25402 (Lhcf10) fucoxanthin chl a/c light-harvesting protein, major type 0.9828	3816 (Lhcr7) fucoxanthin chl a/c light-harvesting protein 0.9802
21472 NA 0.9788	26246 (Lhcr3) fucoxanthin chl a/c light-harvesting protein 0.9788	31749 Chloroa_b-bind superfamily 0.9783	2342 (Lhcr11) fucoxanthin chlorophyll a/c light-harvesting protein 0.9774

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chloroa_b-bind		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	cl02879	87.3621	6.80E-22	56 - 180	specific	249913
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	87.3621	6.80E-22	56 - 180	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_17531	PHATRDRAFT_17531	211453	196365	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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