31661 Raffinose_syn superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
31661	chr_1	Raffinose_syn superfamily	2151670	2154789	-	Raffinose_syn superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445527	Thaps31661.3, Thaps31661.1, Thaps31661.4, Thaps31661.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0204

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0019	0.40	0.000000047 0.0044

Most Highly Correlated Transcripts

bd524 (bd524) NA 0.8427	bd636 (bd636) L51_S25_CI-B8 0.7795	5093 hypothetical protein 0.7743	bd1806 (bd1806) AAT_I superfamily 0.7718	263509 mutl 0.7705	23601 hypothetical protein 0.7694
22107 hypothetical protein 0.7672	22859 hypothetical protein 0.7635	5828 hypothetical protein 0.7603	264926 crtI_fam 0.7601

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Raffinose_syn superfamily		Raffinose synthase or seed imbibition protein Sip1; This family consists of several raffinose...	-	535.048	1.50E-177	191 - 874	superfamily	253325

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	272045	256612	439480	Cre16.g666334.t1.1	AT3G57520.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004553 GO:0005975 GO:0047274 -

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