31722 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31722 chr_2 HMGB-UBF_HMG-box 172840 173487 + HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7452173 Thaps31722.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0478

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0030
 0.47

Most Highly Correlated Transcripts

bd1071

(bd1071) NA
0.8359

23896

PI-PLCc_GDPD_SF superfamily
0.8328

5728

HA
0.8197

8269

(Tp_CXC1) regulator [Rayko]
0.8192

11168

hypothetical protein
0.8164

12899

AAA
0.8114

7356

Nudix_Hydrolase superfamily
0.8008

3663

hypothetical protein
0.8002

1161

(Tp_CCHH11) regulator [Rayko]
0.7964

21220

KU superfamily
0.7949

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 77.6681 7.31E-19 64 - 129 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 77.6681 7.31E-19 64 - 129 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre06.g261450.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000785 GO:0003677 GO:0005634 GO:0006355 -

GO:0000785

chromatin

Details: 
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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