31875 Pumilio
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31875 chr_2 Pumilio 2634957 2636106 - Pumilio

Synonyms

NCBI ID Ensembl Genomes exon ID
7452139 Thaps31875.2, Thaps31875.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0455

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0045
 0.44

Most Highly Correlated Transcripts

18536

Chloroa_b-bind
0.771

36641

Aldolase_Class_I superfamily
0.7343

bd153

(bd153) NA
0.7027

bd650

(bd650) NA
0.6512

2095

hypothetical protein
0.651

bd387

(bd387) NA
0.6486

bd1850

(bd1850) NA
0.6373

28125

PLN00203
0.6354

25854

Peptidase_C48 superfamily
0.631

bd1835

(bd1835) NA
0.6261

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pumilio superfamily Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)... - 298.351 4.80E-99 1 - 340 superfamily 153420
Pumilio superfamily Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)... - 298.351 4.80E-99 1 - 340 superfamily 153420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0016071 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0016071

mRNA metabolic process

Details: 
The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
GO Category: 
BP

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