32015 (Tp_Myb3R2) SANT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32015 chr_2 (Tp_Myb3R2) SANT 1839294 1840754 - SANT

Synonyms

NCBI ID Ensembl Genomes exon ID
7452463 Thaps32015.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0345

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0017
 0.42

Most Highly Correlated Transcripts

bd810

(bd810) NA
0.8298

bd828

(bd828) NA
0.7679

bd771

(bd771) NA
0.7024

2047

hypothetical protein
0.6992

bd650

(bd650) NA
0.6987

bd517

(bd517) NA
0.6629

9259

hypothetical protein
0.6523

bd989

(bd989) rps20
0.6278

bd630

(bd630) NA
0.6165

19637

hypothetical protein
0.5931

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 62.593 1.45E-12 321 - 364 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 62.593 1.45E-12 321 - 364 superfamily 266586
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 62.593 1.45E-12 321 - 364 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 62.593 1.45E-12 321 - 364 superfamily 266586

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 163092 142221 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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